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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10116366_10119058_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10116366 - 10119058
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCTTTCTTAATT
Flanking Amino Acid:
KKPPPYKHIKVNRPVGKVQI
Intron Amino Acid Position:
1321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
64.8
0.33
1.1
61.5
43.7
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
76.9
0.92
1.2
82.74
39.5

Associated Gene:

Gene:
NSD1
Ensembl Gene ID:
ENSAPLG00000003144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003227
10092676 - 10132019
39344