About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1013687_1016927_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1013687 - 1016927
Intron Length:
3241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGCA
5'SS Class:
major
3'SS Sequence:
CCTCTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
TCCTCTTTCATT
Flanking Amino Acid:
LITPVIALLPRFFIFALQGT
Intron Amino Acid Position:
1309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.9
35.7
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
73.6
0.53
0.8
74
29.5
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
60.8
0.42
1.7
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012027
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012549
1013179 - 1064319
51141