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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10145044_10145186_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10145044 - 10145186
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGTCCCCCAAGG
Flanking Amino Acid:
CAKCKKKITGEVMHALKMTW
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
79.6
0.67
0.8
73.5
31.5
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
42.3
-0.7
2.1
48.07
44.3

Associated Gene:

Gene:
PDLIM7
Ensembl Gene ID:
ENSAPLG00000015874
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045484
10144846 - 10156483
11638
ENSAPLT00000024112
10144846 - 10156483
11638
ENSAPLT00000016573
10144846 - 10156305
11460