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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10145694_10145803_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10145694 - 10145803
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCATCCAGGAGC
Flanking Amino Acid:
GAAMKTEPGLAPRTPAATPG
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
67.9
0.4
1.1
61.2
44.3
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
42.1
-0.6
2
47.9
41.9

Associated Gene:

Gene:
PDLIM7
Ensembl Gene ID:
ENSAPLG00000015874
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045484
10144846 - 10156483
11638
ENSAPLT00000024112
10144846 - 10156483
11638
ENSAPLT00000016573
10144846 - 10156305
11460