About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10150643_10150879_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10150643 - 10150879
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCTGCCTCACCG
Flanking Amino Acid:
CGDRLCLTLSRAQNHLGKPQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
88.4
0.86
0.7
83.9
24.2
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
46.3
-0.4
2
50.75
49.3

Associated Gene:

Gene:
PDLIM7
Ensembl Gene ID:
ENSAPLG00000015874
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024112
10144846 - 10156483
11638
ENSAPLT00000016573
10144846 - 10156305
11460
ENSAPLT00000045484
10144846 - 10156483
11638