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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10163343_10163448_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10163343 - 10163448
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
TTTTCCCCCACA
Flanking Amino Acid:
ETDREVEYFKRFCLDSAKQT
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
51.9
0.05
2.3
76.63
40.3

Associated Gene:

Gene:
FAM193B
Ensembl Gene ID:
ENSAPLG00000028765
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040992
10162944 - 10168436
5493