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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10163525_10163694_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10163525 - 10163694
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGGTGCTGAACT
Flanking Amino Acid:
NKVEKSSTSIDDVFLPKDLD
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
72
0.5
1
65.2
41.1
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
59.7
0.38
1.9
77.77
44.2

Associated Gene:

Gene:
FAM193B
Ensembl Gene ID:
ENSAPLG00000028765
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040992
10162944 - 10168436
5493