About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10164719_10165231_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10164719 - 10165231
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTCTCTGACCC
Flanking Amino Acid:
KRARHKQKKKEKEKAQLEAE
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
68.5
0.42
1
60.9
40.2
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
51.1
0.01
1.7
65.34
39.8

Associated Gene:

Gene:
FAM193B
Ensembl Gene ID:
ENSAPLG00000028765
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040992
10162944 - 10168436
5493