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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10165469_10165830_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10165469 - 10165830
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
ATCCCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CGGGTTTCATCC
Flanking Amino Acid:
CYCEFFGHNAPPAAPTSRNY
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72
0.5
0.8
65.8
29.4
Minor 5ss
33.8
-1.8
2.9
40.5
45.5
Minor BPS
40.8
-0.7
1.7
41.84
39.5

Associated Gene:

Gene:
FAM193B
Ensembl Gene ID:
ENSAPLG00000028765
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040992
10162944 - 10168436
5493