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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10167589_10167887_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10167589 - 10167887
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGGCAG
U12 Branch Point Sequence:
CGGGCCCTAGCT
Flanking Amino Acid:
SPLGAPPAALGDKHPSLALS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
36.5
-0.8
1.6
38.4
41.7
Major PPT
80.7
0.69
0.8
77
31.7
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
45.9
-0.2
2
61.21
48

Associated Gene:

Gene:
FAM193B
Ensembl Gene ID:
ENSAPLG00000028765
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040992
10162944 - 10168436
5493