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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10171952_10172082_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10171952 - 10172082
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CGGGTCCCGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGCTCCTGACCC
Flanking Amino Acid:
LGNHMLFAAECLLAGTFIEV
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
56.9
0.16
1.1
50.8
39.3
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
51.7
0.03
1.8
60.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119