About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10172286_10172365_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10172286 - 10172365
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CCTGGCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GTCCCCCCACCC
Flanking Amino Acid:
FDRLFAEFELSYVSSLVAVK
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
72
0.49
0.9
61.4
40.1
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
42.8
-0.5
2
54.01
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119