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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10172643_10172734_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10172643 - 10172734
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
CGTGTCACACGC
Flanking Amino Acid:
MFTIPRLAIISGLLIYPEGP
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
71.5
0.48
0.8
65.1
30.5
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
34
-1.2
2
39.1
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119