About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10172837_10172931_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10172837 - 10172931
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCCCTCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
CGGGGCTGACCC
Flanking Amino Acid:
SPFYNLLKKIRDLLRVLSAE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
71.2
0.48
0.9
64.4
31
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
39.3
-0.8
2.1
43.13
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119