Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10173383_10173461_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10173383 - 10173461

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTGCGGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACCCAG

U12 Branch Point Sequence:

GCACCCAGAGCC

Flanking Amino Acid:

MLHTLFVCISGVADQLQTNF

Intron Amino Acid Position:

448

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

41.4

-0.5

1.5

47.8

37.7

Major PPT

63.8

0.31

1.1

57.6

43.2

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

-0.6

1.8

48.12

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028134

10170639 - 10174757

4119