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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10173794_10173923_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10173794 - 10173923
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TTTTCCCCATCA
Flanking Amino Acid:
PTEGTGLRRAGAHSRPEWVP
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
80.2
0.68
0.8
79.4
27.8
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
53.9
0.12
2.1
76.79
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119