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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10174037_10174116_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10174037 - 10174116
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
CCTGTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTCAGCACCT
Flanking Amino Acid:
RRHHCRSCGKIFCARCSPHT
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
68.3
0.41
0.9
60.5
35.4
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
40
-0.6
2.5
61.98
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028134
10170639 - 10174757
4119