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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10175596_10175701_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10175596 - 10175701
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCGGCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TCCCGCTGAGCG
Flanking Amino Acid:
RSVHNALEKHRRAQLRRCLE
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
57.2
0.16
0.9
48.9
34.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
42
-0.7
2.1
45.42
46.6

Associated Gene:

Gene:
MXD3
Ensembl Gene ID:
ENSAPLG00000017205
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035061
10175285 - 10176300
1016