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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10177065_10177481_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10177065 - 10177481
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACGAT
U12 Branch Point Sequence:
TTTGTTGTTACA
Flanking Amino Acid:
GFEYVLAKMQGEAPSKTLVE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
54.2
0.11
1.3
52.8
42.7
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
46
-0.3
2.3
65.78
41.1

Associated Gene:

Gene:
PRELID1
Ensembl Gene ID:
ENSAPLG00000029369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018269
10176928 - 10179466
2539