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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10177944_10178016_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10177944 - 10178016
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GTTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCAGCACTGACG
Flanking Amino Acid:
TWNINHARLMVVEERCVYRV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.5
0.44
1
62.2
39.8
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
41.3
-0.8
2
42.1
42.4

Associated Gene:

Gene:
PRELID1
Ensembl Gene ID:
ENSAPLG00000029369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018269
10176928 - 10179466
2539