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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10180519_10180635_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10180519 - 10180635
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CGTCCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GGTCACTCACCT
Flanking Amino Acid:
IPGTNQYNAEGANPMLNLPM
Intron Amino Acid Position:
1266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.8
43.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
68.7
0.42
1
61.3
40.1
Minor 5ss
37.1
-1.5
3
40.5
45.5
Minor BPS
46.1
-0.2
2
64.98
44.4

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276