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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10183765_10183872_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10183765 - 10183872
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAG
U12 Branch Point Sequence:
GCAGCCCTATTG
Flanking Amino Acid:
EGQNVSMEVKAIDNDEPNTP
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
46.9
-0.1
1.7
63.1
44.4
Major PPT
80.7
0.69
0.8
77
31.7
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
41.9
-0.7
2
41.34
43.3

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276