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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10184114_10184199_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10184114 - 10184199
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
GCGTGTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
GCCCCGGTGATG
Flanking Amino Acid:
QITYQLLPDTILTTFTVNAT
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
60.2
44.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
60.9
0.25
1
52.8
41.7
Minor 5ss
33.4
-1.9
3.4
44
44.1
Minor BPS
36.2
-1.2
2.4
35.78
40.3

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276