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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10184648_10184827_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10184648 - 10184827
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
CTCCACCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
ACTTCTCCACCC
Flanking Amino Acid:
YEISHVMVVQLIANDTGNPA
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
68.6
0.42
0.8
61.6
28.6
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
44.6
-0.4
2
57.37
41.5

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276