Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10185517_10185670_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10185517 - 10185670

Intron Length:

154

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGCGAG

5'SS Class:

major

3'SS Sequence:

CCCCGTGCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGCAG

U12 Branch Point Sequence:

CTGGCTGCAGCA

Flanking Amino Acid:

VNDEIFYSITNASVPFAINM

Intron Amino Acid Position:

334

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.1

53.4

39.9

Major BPS

38.5

-0.7

1.7

47.8

Major PPT

66.8

0.38

0.9

56.5

38.8

Minor 5ss

32.4

-2

3.4

42.9

45.3

Minor BPS

37.8

-0.9

2.2

46.46

43.9

Associated Gene:

Gene:

CDHR2

Ensembl Gene ID:

ENSAPLG00000009589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009985

10179997 - 10189272

9276