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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10185747_10185823_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10185747 - 10185823
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTGCCCTCACCT
Flanking Amino Acid:
SGSVSENSPLGVSVLTVTAT
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
50.5
0.09
1.9
69.53
47

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276