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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10186171_10186429_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10186171 - 10186429
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGTCCCCCACCC
Flanking Amino Acid:
AAKVSYSILEVIPDNAKNFW
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
63.8
0.31
0.9
54.5
35.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
45.6
-0.3
2.1
62.32
42.5

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276