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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10186520_10186974_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10186520 - 10186974
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTCCT
5'SS Class:
major
3'SS Sequence:
TTTGGGTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTCCCCCAAACT
Flanking Amino Acid:
GLPYETSVPENMMAGSIIYT
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
66.5
44.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
66.3
0.37
1.1
57.4
47.4
Minor 5ss
41.3
-1
3.1
60.4
43.9
Minor BPS
49
0
2.1
69.96
46.6

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276