About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10187234_10187361_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10187234 - 10187361
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CGGCGCTGAGCG
Flanking Amino Acid:
VTLRNLLDRESQARLTLTVT
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
77.1
0.61
0.9
68.5
42.1
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
39.4
-0.9
2
38.43
44.1

Associated Gene:

Gene:
CDHR2
Ensembl Gene ID:
ENSAPLG00000009589
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009985
10179997 - 10189272
9276