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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1020811_1022030_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1020811 - 1022030
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCTCTC
5'SS Class:
major
3'SS Sequence:
TTATGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATTGTTCATT
Flanking Amino Acid:
RQLKVMTLSIGDGANDVSMI
Intron Amino Acid Position:
1050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
67.3
44.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78
0.63
0.9
70.2
41.1
Minor 5ss
43.3
-0.7
3.1
62
42.6
Minor BPS
48.9
-0
2.4
75.74
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012027
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012549
1013179 - 1064319
51141