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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10208513_10208707_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10208513 - 10208707
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CCCTCTTTACGT
Flanking Amino Acid:
QKLAEERRRQTLQEEKERKS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
74
0.6
1
65.6
41.1
Major PPT
79.5
0.66
0.9
73
37
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
48.5
-0
2
62.23
48.4

Associated Gene:

Gene:
FAF2
Ensembl Gene ID:
ENSAPLG00000009406
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009821
10207396 - 10216496
9101