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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10208880_10209127_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10208880 - 10209127
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCACATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CAGCCCTGACCA
Flanking Amino Acid:
QTYLVSERLEREERNQTQVL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
71.6
0.49
0.9
64.9
35.2
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
47.7
-0.1
1.8
54.92
43.4

Associated Gene:

Gene:
FAF2
Ensembl Gene ID:
ENSAPLG00000009406
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009821
10207396 - 10216496
9101