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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10212442_10213201_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10212442 - 10213201
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
GCGAGCTGAATT
Flanking Amino Acid:
FTYYTLLDIFRFALRFIRPD
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
76.1
0.59
0.7
68.8
31.6
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46.1
-0.2
1.9
58.07
44.9

Associated Gene:

Gene:
FAF2
Ensembl Gene ID:
ENSAPLG00000009406
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009821
10207396 - 10216496
9101