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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10239691_10239768_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10239691 - 10239768
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CGTGTGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CGGCGCTGAGCC
Flanking Amino Acid:
MSSRPPAAPALERGGGAVA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
66
0.36
1.1
60.9
44.7
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
40.9
-0.7
2
45.46
42.7

Associated Gene:

Gene:
KIAA1191
Ensembl Gene ID:
ENSAPLG00000009342
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009750
10239663 - 10247277
7615