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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10239960_10240840_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10239960 - 10240840
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCATAACC
Flanking Amino Acid:
PERKYQELSKVEEGDAHVNA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
75.1
40.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.4
0.66
0.9
75.6
33
Minor 5ss
40.1
-1.1
3.2
57.4
46.9
Minor BPS
59.5
0.28
1.7
68.2
43.2

Associated Gene:

Gene:
KIAA1191
Ensembl Gene ID:
ENSAPLG00000009342
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009750
10239663 - 10247277
7615