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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10240968_10242598_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10240968 - 10242598
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
CTTTTGTGAACG
Flanking Amino Acid:
THIIMNSLITKQTQESIQRF
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
79.5
0.66
0.9
70.7
39.8
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
49.7
-0.1
2.2
63.41
44.6

Associated Gene:

Gene:
KIAA1191
Ensembl Gene ID:
ENSAPLG00000009342
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009750
10239663 - 10247277
7615