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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10242724_10244714_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10242724 - 10244714
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
CCTTTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CCTTTCCCAACA
Flanking Amino Acid:
KYHRVAEAVHKLKMQSGEMT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.5
36.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
74.8
0.56
0.8
69.9
29.5
Minor 5ss
42.1
-0.9
3.2
61
43.6
Minor BPS
49.7
-0
1.9
63.62
42.9

Associated Gene:

Gene:
KIAA1191
Ensembl Gene ID:
ENSAPLG00000009342
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009750
10239663 - 10247277
7615