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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10245264_10245475_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10245264 - 10245475
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTACCA
Flanking Amino Acid:
KAIQKSTNDPGGFTIQSYKG
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84
0.77
0.9
78.5
39.2
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
67.1
0.53
1.5
76.76
34.5

Associated Gene:

Gene:
KIAA1191
Ensembl Gene ID:
ENSAPLG00000009342
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009750
10239663 - 10247277
7615