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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10248669_10249653_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10248669 - 10249653
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CTCTTCCCAACA
Flanking Amino Acid:
LLISYQNVILDHLRSSLYER
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
49.4
-0
1.9
63.62
42.9

Associated Gene:

Gene:
SIMC1
Ensembl Gene ID:
ENSAPLG00000009331
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009715
10247165 - 10255361
8197