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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10249981_10250917_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10249981 - 10250917
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
TCCCCCACAATA
Flanking Amino Acid:
FILNIPVRSQREALLNSMDS
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
47.7
-0.1
1.8
57.96
41.7

Associated Gene:

Gene:
SIMC1
Ensembl Gene ID:
ENSAPLG00000009331
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009715
10247165 - 10255361
8197