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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10251047_10251535_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10251047 - 10251535
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
CTCTCTGACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTCTCTGACCT
Flanking Amino Acid:
EALPSTVFAQKAMFLLQRML
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
40.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
64.6
0.33
0.9
57.7
37.6
Minor 5ss
39.9
-1.1
3
49.3
40.8
Minor BPS
53.8
0.2
1.8
73.74
43.1

Associated Gene:

Gene:
SIMC1
Ensembl Gene ID:
ENSAPLG00000009331
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009715
10247165 - 10255361
8197