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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10254141_10254666_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10254141 - 10254666
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGCTGCTGACAC
Flanking Amino Acid:
RRHRHRESPAEIIDLTCEDT
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.4
40.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
39.8
-0.7
2.1
44.75
43.2

Associated Gene:

Gene:
SIMC1
Ensembl Gene ID:
ENSAPLG00000009331
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009715
10247165 - 10255361
8197