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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10255038_10255738_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10255038 - 10255738
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CCTCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGGAT
U12 Branch Point Sequence:
CGTTGGATAACC
Flanking Amino Acid:
SVFLLEKDRLVKENNYRGHG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.2
43.8
Major BPS
53.7
0.09
1.6
57.1
49.4
Major PPT
77
0.61
0.7
68.9
31.6
Minor 5ss
26.4
-2.7
2.9
27.5
37.7
Minor BPS
43.4
-0.5
2.5
59.82
45.2

Associated Gene:

Gene:
THOC3
Ensembl Gene ID:
ENSAPLG00000017550
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022109
10254742 - 10259150
4409