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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10255896_10256769_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10255896 - 10256769
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
ATGTGTGGAAAT
Flanking Amino Acid:
TKCIATVNTKGENINICWSP
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
67.5
37.7
Major BPS
52
0.05
1.3
59
44.6
Major PPT
72
0.5
0.8
62.9
34.5
Minor 5ss
36.1
-1.6
2.8
44.9
43.1
Minor BPS
40.3
-0.6
2.3
60
43.6

Associated Gene:

Gene:
THOC3
Ensembl Gene ID:
ENSAPLG00000017550
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022109
10254742 - 10259150
4409