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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10326696_10329121_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10326696 - 10329121
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
ACCTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GCATTTTTAACC
Flanking Amino Acid:
SNECLLCSQNLQRHTNVRIK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.4
0.64
0.8
69.2
36.3
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
67.8
0.54
1.2
67.16
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001223
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001216
10326614 - 10329867
3254