About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1036607_1037536_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1036607 - 1037536
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGAT
5'SS Class:
major
3'SS Sequence:
TCTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATCTTTTAAAA
Flanking Amino Acid:
DGHEFSHQENAKRLETHKEL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.8
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.8
80
30.9
Minor 5ss
30.8
-2.2
3.7
43
45.6
Minor BPS
64.3
0.44
1.3
71.01
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012027
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012549
1013179 - 1064319
51141