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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10379126_10380577_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10379126 - 10380577
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TCAAGATATCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CCACTCTAAACC
Flanking Amino Acid:
KNECDLCSAAIQTDKLYKFL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.8
41
Major BPS
73
0.57
1
73.6
28.6
Major PPT
50.4
0.01
1.2
46.1
44.2
Minor 5ss
32.1
-2
2.7
38
39.9
Minor BPS
49.6
-0
1.7
55.69
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022398
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020114
10378911 - 10380632
1722