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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10389220_10390005_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10389220 - 10390005
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTT
Flanking Amino Acid:
RVALALCCFLDTTFGIEVDC
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
54.1
0.21
1.7
72.08
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001082
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001102
10389030 - 10398600
9571