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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10391492_10391922_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10391492 - 10391922
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGCTCCCTAACC
Flanking Amino Acid:
DNECGICAYNAEHHTNITKM
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.7
44.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
41.1
-1
3.1
54.8
42.5
Minor BPS
62.5
0.37
1.7
69.15
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001082
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001095
10233849 - 10399450
165602
ENSAPLT00000001102
10389030 - 10398600
9571