Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10393640_10394498_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10393640 - 10394498

Intron Length:

859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

CTGCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGAACAA

U12 Branch Point Sequence:

AGGGCCAACACT

Flanking Amino Acid:

SGKCKQEAPEVDCSQYPART

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.7

1.05

0.6

92.2

16.3

Major BPS

45.2

-0.3

1.1

47.1

36.1

Major PPT

84.7

0.78

0.8

79.9

32.1

Minor 5ss

33.9

-1.8

2.8

41.8

44.8

Minor BPS

-0.7

2.2

55.62

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001102

10389030 - 10398600

9571

ENSAPLT00000001095

10233849 - 10399450

165602